bioinformatique

BiGR

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Bioinformatics platform, Gustave Roussy
Adresse

Plateforme de bioinformatique BiGR
UMS AMMICA
INSERM US23 / CNRS UMS3655
PF de l'Institut Français de Bioinformatique (IFB)
Bâtiment B2M - étage 1 - pièce 136
114, rue Édouard-Vaillant

94805 Villejuif Cedex - France
France

Téléphone
0142114112
SFBI
N'est pas membre de la SFBI

BF2I

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Atelier de Bioinformatique
Adresse

INSA Bâtiment Louis Pasteur
20 avenue Albert Einstein

69621 Villeurbanne cedex
France

Téléphone
+33 (0)4 72 43 83 56
Fax
+33 (0)4 72 43 85 34
Description (English)

Research at BF2I is focused on the comprehension of the functions managing the interaction of specific insect pests (aphids and weevils) with their direct biological partners (host plants and symbiotic microorganisms). Research approaches are multi-disciplinary thanks to the different expertise of the staff members.

The central theme of our research is to understand the relationships established between insects and their symbionts elucidating the molecular mechanisms that allow the establishment, maintenance and persistence of these complex interactions in multiple insect generations.

The final goal of research on these complex biological interactions, often involving multiple partners in interaction with the environment, is to identify tools and define new concepts for an integrated approach for plant protection against insect pests. Our research results are to be central for the development of agricultural practices that are sustainable, and respect both the environment and human health.

English keywords
symbiosis, insect pests, functional genomics, systems biology
SFBI
Membre de la SFBI

Dyliss

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
DYnamics, Logics and Inference for biological Systems and Sequences
Adresse

IRISA & INRIA Rennes
Bat 12A
Campus de Beaulieu

35042 Rennes cedex
France

Téléphone
0299847100
Description (English)

Dyliss is a research team in bioinformatics. We focus on sequence analysis and systems biology. We use qualitative formal systems to characterize genetic actors from non model species, such as algae or mining baceria, that control phenotypic answers when challenged by their environment.

  • Methods: constraint logic programming, symbolic dynamics, machine learning, formal systems.
  • Expertise: functional characterization, non-model species, multi-scale integration.
  • Application domains: marine biology, micro-environmental biology...

The main computational challenge is to face lacks and incompleteness in both expert knowledge and experimental observations. Our strategy relies on three main points.

  • We focus on a targeted functional characterization rather than on a complete understanding of the species.
  • We rely on knowledge rather than on amounts of experimentations.
  • We use model-species to validate methods.

We use qualitative formal systems for knowledge acquisition and integration. All our methods aim at identifying the space of all models that are consistent with both knowledge and observations. Then we provide tools to navigate in this space in order to investigate which properties are shared by a large proportion of the space.

SFBI
Membre de la SFBI

MaBioVis

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Modèles et algorithmes pour la bioinformatique et la visualisation
Adresse

France

Téléphone
+33 540 003 506
Description (English)

Computational biology

English keywords
computational biology
SFBI
Membre de la SFBI

IMGT®

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
IMGT®, the international ImMunoGeneTics information system®
Adresse

IMGT, Laboratoire d'ImmunoGénétique Moléculaire LIGM,
Institut de Génétique Humaine IGH, UPR CNRS 1142
141 rue de la Cardonille

34396 MONTPELLIER cedex 5 FRANCE
France

Téléphone
33(0)434359965
Fax
33(0)434359901
Description (English)

IMGT®, the international ImMunoGeneTics information system®, http://www.imgt.org, is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université Montpellier 2 and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.

English keywords
immunogenetics, immunoinformatics, IMGT-ONTOLOGY, antibody, T cell receptor, IMGT Collier de Perles, major histocompatibility
SFBI
Membre de la SFBI

MGX

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Plateforme Montpellier GenomiX
Adresse

Biocampus UMS3426
c/o Institut de Genomique Fonctionnelle
UMR5203 CNRS – U1191 INSERM – Universite de Montpellier
141, rue de la cardonille

34094 Montpellier Cedex 05

France

Téléphone
04 34 35 92 39
English keywords
NGS genomics sequencing bioinformatics
SFBI
N'est pas membre de la SFBI