Génomique

BiGR

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Bioinformatics platform, Gustave Roussy
Adresse

Plateforme de bioinformatique BiGR
UMS AMMICA
INSERM US23 / CNRS UMS3655
PF de l'Institut Français de Bioinformatique (IFB)
Bâtiment B2M - étage 1 - pièce 136
114, rue Édouard-Vaillant

94805 Villejuif Cedex - France
France

Téléphone
0142114112
SFBI
N'est pas membre de la SFBI

BF2I

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Atelier de Bioinformatique
Adresse

INSA Bâtiment Louis Pasteur
20 avenue Albert Einstein

69621 Villeurbanne cedex
France

Téléphone
+33 (0)4 72 43 83 56
Fax
+33 (0)4 72 43 85 34
Description (English)

Research at BF2I is focused on the comprehension of the functions managing the interaction of specific insect pests (aphids and weevils) with their direct biological partners (host plants and symbiotic microorganisms). Research approaches are multi-disciplinary thanks to the different expertise of the staff members.

The central theme of our research is to understand the relationships established between insects and their symbionts elucidating the molecular mechanisms that allow the establishment, maintenance and persistence of these complex interactions in multiple insect generations.

The final goal of research on these complex biological interactions, often involving multiple partners in interaction with the environment, is to identify tools and define new concepts for an integrated approach for plant protection against insect pests. Our research results are to be central for the development of agricultural practices that are sustainable, and respect both the environment and human health.

English keywords
symbiosis, insect pests, functional genomics, systems biology
SFBI
Membre de la SFBI

LPMA-PSB

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Laboratoire de Probabilités et Modèles Aléatoires - Equipe Probabilités, Statistiques et Biologie
Adresse

Université Pierre et Marie Curie
Case courrier 188
4 place Jussieu

75252 PARIS Cedex 05, FRANCE
France

Description (English)

PSB gathers probabilists and statisticians of LPMA interested in mathematical problems inspired by biology or/and applying mathematics to biological problems.

English keywords
Ecology, Evolution, Genomics, Neurosciences
SFBI
Membre de la SFBI

IMGT®

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
IMGT®, the international ImMunoGeneTics information system®
Adresse

IMGT, Laboratoire d'ImmunoGénétique Moléculaire LIGM,
Institut de Génétique Humaine IGH, UPR CNRS 1142
141 rue de la Cardonille

34396 MONTPELLIER cedex 5 FRANCE
France

Téléphone
33(0)434359965
Fax
33(0)434359901
Description (English)

IMGT®, the international ImMunoGeneTics information system®, http://www.imgt.org, is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université Montpellier 2 and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.

English keywords
immunogenetics, immunoinformatics, IMGT-ONTOLOGY, antibody, T cell receptor, IMGT Collier de Perles, major histocompatibility
SFBI
Membre de la SFBI

MGX

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Plateforme Montpellier GenomiX
Adresse

Biocampus UMS3426
c/o Institut de Genomique Fonctionnelle
UMR5203 CNRS – U1191 INSERM – Universite de Montpellier
141, rue de la cardonille

34094 Montpellier Cedex 05

France

Téléphone
04 34 35 92 39
English keywords
NGS genomics sequencing bioinformatics
SFBI
N'est pas membre de la SFBI

GenScale

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Scalable, Optimized and Parallel Alforithms for Genomics
Adresse

Campus de Beaulieu -
35042 Rennes cedex
France

Téléphone
02 99 84 72 17
Fax
02 99 84 71 71
Description (English)

GenScale is a bioinformatics research team. Its main goal is to develop scalable methods, tools, and software forprocessing genomic data.

Our research is motivated by the fast development of next-generation sequencing (NGS) and third generation (TGS) technologies that provide very challenging problems both in terms of bioinformatics and computer sciences.

GenScale research is organized along four main axes:

  • Data structures
    • Indexing the mass of genomic data
    • Focus on the de-Bruijn graph structure.
    • Provide end-user and optimized library
  • Algorithms
    • Optimized (time and memory) tools dedicated to NGS processing
    • Data compression, genome assembly, variant detection, metagenomics, GWAS (genome-wide association Study)
  • Parallelism
    • Combine several levels of parallelism
    • Use existing techniques as multithreading or MapReduce
    • Constrained algorithmic development, in particular, targeting hardware accelerators
  • Applications
    • Participate in biology-oriented projects
    • Inra, CEA, National Museum, Hospitals, …

 

 

SFBI
Membre de la SFBI

GEPV-bioinfo

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Plateau Bioinformatique de l'EEP
Adresse

Unité Evo-Eco-Paléo (EEP) - UMR 8198
CNRS / Université de Lille - Sciences et Technologies
Bâtiment SN2 bureau 116

59655 Villeneuve d'Ascq - FRANCE
France

Téléphone
33 (0)3 20 33 62 45
SFBI
N'est pas membre de la SFBI