NGS

BiGR

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Bioinformatics platform, Gustave Roussy
Adresse

Plateforme de bioinformatique BiGR
UMS AMMICA
INSERM US23 / CNRS UMS3655
PF de l'Institut Français de Bioinformatique (IFB)
Bâtiment B2M - étage 1 - pièce 136
114, rue Édouard-Vaillant

94805 Villejuif Cedex - France
France

Téléphone
0142114112
SFBI
N'est pas membre de la SFBI

IBENS-GPC

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Plateforme génomique de l'IBENS
Adresse

75230 Paris Cedex 05, France
France

Description (English)

The genomic platform of the Institut de Biologie de l’École normale supérieure (IBENS) assists you in high throughput functional genomics projects. Our 15-year experience in transcriptomic analysis and an ISO-9001 quality approval guarantee us precision and traceability when treating your samples.

We are charter member of the network « Genomic Paris Centre », in partnership with Institut Curie and Université Pierre et Marie Curie (UPMC). We are approved by the Infrastructures en Biologie Santé et Agronomie (IBiSA) and are part of the France Génomique consortium.

We offer our help in every aspect of your genomic projects. Whether you have questions about funding request, experimental design, management of your samples, use of our equipment, data analysis or training, we are here to help. Do not hesitate in visiting the website to discover our activities. You can go to the contact page if you wish to know more about us.

SFBI
N'est pas membre de la SFBI

IMGT®

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
IMGT®, the international ImMunoGeneTics information system®
Adresse

34396 MONTPELLIER cedex 5 FRANCE
France

Téléphone
33(0)434359965
Fax
33(0)434359901
Description (English)

IMGT®, the international ImMunoGeneTics information system®, http://www.imgt.org, is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université Montpellier 2 and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.

English keywords
immunogenetics, immunoinformatics, IMGT-ONTOLOGY, antibody, T cell receptor, IMGT Collier de Perles, major histocompatibility
SFBI
Membre de la SFBI

GenScale

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Scalable, Optimized and Parallel Alforithms for Genomics
Adresse

Campus de Beaulieu -
35042 Rennes cedex
France

Téléphone
02 99 84 72 17
Fax
02 99 84 71 71
Description (English)

GenScale is a bioinformatics research team. Its main goal is to develop scalable methods, tools, and software forprocessing genomic data.

Our research is motivated by the fast development of next-generation sequencing (NGS) and third generation (TGS) technologies that provide very challenging problems both in terms of bioinformatics and computer sciences.

GenScale research is organized along four main axes:

  • Data structures
    • Indexing the mass of genomic data
    • Focus on the de-Bruijn graph structure.
    • Provide end-user and optimized library
  • Algorithms
    • Optimized (time and memory) tools dedicated to NGS processing
    • Data compression, genome assembly, variant detection, metagenomics, GWAS (genome-wide association Study)
  • Parallelism
    • Combine several levels of parallelism
    • Use existing techniques as multithreading or MapReduce
    • Constrained algorithmic development, in particular, targeting hardware accelerators
  • Applications
    • Participate in biology-oriented projects
    • Inra, CEA, National Museum, Hospitals, …

 

 

SFBI
Membre de la SFBI

TIBS

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Traitement de l'information en Biologie Santé
Adresse

France

English keywords
Sequence algorithmics, NGS, Exome
SFBI
Membre de la SFBI