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URGI

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Unité de recherche en Génomique-Info
Adresse

Unité de Recherches en Génomique-Info (UR INRA 1164),
INRA, Centre de recherche de Versailles, bat.18
RD10, Route de Saint Cyr

78026 Versailles Cedex, FRANCE
France

Téléphone
+33 1 30 83 30 00
Description (English)

URGI - Unité de Recherche Génomique Info - is a research unit in genomics and bioinformatics at Institut National de la Recherche Agronomique (INRA), dedicated to plants and crop parasites. The URGI research activity covers data integration as well as genome structure and dynamics. URGI hosts a bioinformatics platform which belongs to the Institut Français de Bioinformatique, the French node of Elixir, the European network of bioinformatics platforms.

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Dyliss

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
DYnamics, Logics and Inference for biological Systems and Sequences
Adresse

IRISA & INRIA Rennes
Bat 12A
Campus de Beaulieu

35042 Rennes cedex
France

Téléphone
0299847100
Description (English)

Dyliss is a research team in bioinformatics. We focus on sequence analysis and systems biology. We use qualitative formal systems to characterize genetic actors from non model species, such as algae or mining baceria, that control phenotypic answers when challenged by their environment.

  • Methods: constraint logic programming, symbolic dynamics, machine learning, formal systems.
  • Expertise: functional characterization, non-model species, multi-scale integration.
  • Application domains: marine biology, micro-environmental biology...

The main computational challenge is to face lacks and incompleteness in both expert knowledge and experimental observations. Our strategy relies on three main points.

  • We focus on a targeted functional characterization rather than on a complete understanding of the species.
  • We rely on knowledge rather than on amounts of experimentations.
  • We use model-species to validate methods.

We use qualitative formal systems for knowledge acquisition and integration. All our methods aim at identifying the space of all models that are consistent with both knowledge and observations. Then we provide tools to navigate in this space in order to investigate which properties are shared by a large proportion of the space.

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Orpailleur

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Orpailleur
Adresse

Equipe Orpailleur, Bâtiment B
LORIA
Campus Scientifique - BP 239

54506 Vandoeuvre-lès-Nancy Cedex
France

Description (English)

The research themes of the Orpailleur project-team hold mainly on the design of intelligent systems: knowledge systems, information systems, data mining systems (or knowledge discovery systems). These intelligent systems have various forms and may be used in a number of applicative contexts such as biology, chemistry, space, time, and on the Web.

English keywords
knowledge representation, reasonning, knowledge discovery, text mining, semantic Web, protein docking
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Membre de la SFBI