EMBL-EBI

Senior Software Developer

The Archival Infrastructure and Technology team is looking for an enthusiastic software developer to work on our project to unify submissions to the European Bioinformatics Institute (EMBL-EBI) archives. The Unified Submission Interface (USI) project is working to create a new programmatic and web-based submission interface for EMBL-EBI archives.

BioSamples Senior Software Developer

The Archival Infrastructure and Technology team is looking for an enthusiastic, highly motivated Java software developer to join the BioSamples database team. The project: The BioSamples database (http://www.ebi.ac.uk/biosamples) at EMBL-EBI is a resource that integrates biological samples from a wide variety of sources to provide a single location to apply standards and ontologies to sample data. It has grown from 14,000 samples in 2010 to over 6 million samples in 2019.

Stages a l'EMBL-EBI

L'Ambassade de France à Londres finance des stages à l'Institut Européen de Bioinformatique (EMBL-EBI) près de Cambridge. L'EMBL-EBI héberge nombre d'archives de données biologiques européennes (ENA, PDBe, Europe PMC...) des services d'annotation (Ensembl, Uniprot, Reactome...) ainsi que des activités de recherche.

pipeline development for Single-Cell RNA-seq portal

We are looking for a highly motivated Bioinformatician/Senior Bioinformatician to 
contribute to the development of the analysis pipelines behind EMBL-EBI’s Single Cell RNA-Seq portal,
a new added-value database providing information about gene expression in
single cells across different cell types, tissues and conditions. 
A significant part of your work will involve working on the pipelines that
will process data from the Human Cell Atlas (HCA) project for visualising through the portal.

Bioinformatician – GA4GH Meta Data, Ontologies & Biosamples (Maternity cover)

The Samples, Phenotypes and Ontologies Team at EMBL-EBI seeks an enthusiastic, highly motivated bioinformatician to work with the Biosamples database team as part of the Global Alliance for Genomics and Health (GA4GH) initiative. This is a position specific to this project to ensure that human disease biological sample information can be integrated and made available worldwide. 

Software development : Development of a model editor for drug discovery

We are looking for a talented student to develop an editing software tool for Pharmacometrics models. Those models describe and quantify interactions between xenobiotics and patients , including beneficial effects and adverse effects. They are applied to quantify drug, disease and trial information to aid efficient drug development, regulatory decisions and rational drug treatment in patients. Recently, a consortium of academic and industrial partners developed PharmML, a standard markup language to encode those models.

Curation internship: Literature curation of mechanistic models of disease pathways

BioModels Database is a central repository of mathematical models of biological/biomedical processes. It is hosted at EMBL-EBI and is one of the resources of the molecular systems cluster. The models distributed through BioModels are extensively tested and encoded in standard formats (for example, SBML (Systems Biology Markup Language)) and are free to use.