Analyse de séquence

IMGT®

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
IMGT®, the international ImMunoGeneTics information system®
Adresse

IMGT, Laboratoire d'ImmunoGénétique Moléculaire LIGM,
Institut de Génétique Humaine IGH, UPR CNRS 1142
141 rue de la Cardonille

34396 MONTPELLIER cedex 5 FRANCE
France

Téléphone
33(0)434359965
Fax
33(0)434359901
Description (English)

IMGT®, the international ImMunoGeneTics information system®, http://www.imgt.org, is the global reference in immunogenetics and immunoinformatics, created in 1989 by Marie-Paule Lefranc (Université Montpellier 2 and CNRS). IMGT® is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MH superfamily (MhSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates. IMGT® provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT® works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT® consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools.

English keywords
immunogenetics, immunoinformatics, IMGT-ONTOLOGY, antibody, T cell receptor, IMGT Collier de Perles, major histocompatibility
SFBI
Membre de la SFBI

GenScale

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Scalable, Optimized and Parallel Alforithms for Genomics
Adresse

Campus de Beaulieu -
35042 Rennes cedex
France

Téléphone
02 99 84 72 17
Fax
02 99 84 71 71
Description (English)

GenScale is a bioinformatics research team. Its main goal is to develop scalable methods, tools, and software forprocessing genomic data.

Our research is motivated by the fast development of next-generation sequencing (NGS) and third generation (TGS) technologies that provide very challenging problems both in terms of bioinformatics and computer sciences.

GenScale research is organized along four main axes:

  • Data structures
    • Indexing the mass of genomic data
    • Focus on the de-Bruijn graph structure.
    • Provide end-user and optimized library
  • Algorithms
    • Optimized (time and memory) tools dedicated to NGS processing
    • Data compression, genome assembly, variant detection, metagenomics, GWAS (genome-wide association Study)
  • Parallelism
    • Combine several levels of parallelism
    • Use existing techniques as multithreading or MapReduce
    • Constrained algorithmic development, in particular, targeting hardware accelerators
  • Applications
    • Participate in biology-oriented projects
    • Inra, CEA, National Museum, Hospitals, …

 

 

SFBI
Membre de la SFBI

GDEC

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Génétique, Diversité et Ecophysiologie des Céréales
Adresse

France

Téléphone
+33 (0)4 73 62 43 21
Fax
+33 (0)4 73 62 44 53
Description (English)

GDEC Team involved in Bioinformatics

English keywords
Genetic & physical & transcriptomic mapping,positional clonage,genetic recombination,genome sequencing,structural and functional annotation,workflow TriAnnot, wheat, Triticum aestivum
SFBI
Membre de la SFBI

ABI

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Atelier de BioInformatique
Adresse

France

Téléphone
01 40 79 48 09
English keywords
bioinformatics, structural bioinformatics, génomic analysis, population genetics
SFBI
Membre de la SFBI