Métagénomique

GenScale

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Scalable, Optimized and Parallel Alforithms for Genomics
Adresse

35000 Rennes
France

Téléphone
02 99 84 72 17
Fax
02 99 84 71 71
Description (English)

GenScale is a bioinformatics research team. Its main goal is to develop scalable methods, tools, and software forprocessing genomic data.

Our research is motivated by the fast development of next-generation sequencing (NGS) and third generation (TGS) technologies that provide very challenging problems both in terms of bioinformatics and computer sciences.

GenScale research is organized along four main axes:

  • Data structures
    • Indexing the mass of genomic data
    • Focus on the de-Bruijn graph structure.
    • Provide end-user and optimized library
  • Algorithms
    • Optimized (time and memory) tools dedicated to NGS processing
    • Data compression, genome assembly, variant detection, metagenomics, GWAS (genome-wide association Study)
  • Parallelism
    • Combine several levels of parallelism
    • Use existing techniques as multithreading or MapReduce
    • Constrained algorithmic development, in particular, targeting hardware accelerators
  • Applications
    • Participate in biology-oriented projects
    • Inra, CEA, National Museum, Hospitals, …

 

 

SFBI
Membre de la SFBI

G2IM

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Génomique Intégrée des Interactions Microbiennes
Adresse

Bât. Biologie A
Campus Universitaire des Cézeaux
24, avenue des Landais

63177 AUBIERE

France

Description (English)

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English keywords
Microbial genomics, Microbial ecology, Biodiversity, Metagenomics, Genome annotation, DNA microarrays (phylogenetic, functional), Bioremediation, metabolic pathways, Pathogens
SFBI
Membre de la SFBI

ABI

Acronyme ou nom de la structure
Nom complet (en toutes lettres)
Atelier de BioInformatique
Adresse

75005 Paris
France

Téléphone
01 40 79 48 09
English keywords
bioinformatics, structural bioinformatics, génomic analysis, population genetics
SFBI
Membre de la SFBI