CDD Ingénieur

équivalent IE

BIOINFORMATICS ENGINEER IN LIFE SCIENCE (M/F)

The contract aims at continuing the development of SulfAtlas (http://abims.sb-roscoff.fr/sulfatlas), a database recently selected for the IFB (Institut Français de Bioinformatique) / Elixir-Fr Service Delivery Plan (https://bio.tools/sulfatlas). The mission includes one main axis : (i) extension of the SulfAtlas database (Barbeyron et al, 2016, Plos One, 11:e0164846), a database dedicated to the classification of sulfatases, to include HMM based classification method and results. This will include (i-1) development of a bioinformatics pipeline for the semi-automatic update of SulfAtlas.

single-cell RNAseq

Les laboratoires de S.Roulland/B.Nadel et de P.Milpied au CIML (http://www.ciml.univ-mrs.fr) poursuivent un programme de recherche visant à étudier l'hétérogénéité cellulaire d’hémopathies malignes humaines à l’échelle de la cellule unique (Milpied et al. Nat Immunol 2018). Le candidat participera à l’analyse de données single-cell RNA-seq issues d’échantillons humains de lymphomes.

Poste d'ingénieur (IE/IR) Development of network integration database, methods and tools for metabolomics

Keywords: Bioinformatics, Network Science, Semantic web technology, Graph database, Metabolomics

International grant: This research project is included in an internationally funded grant (ANR-DFG, 928k€) between 4 leading labs in the field of metabolomics in France and Germany. Funding includes travel grants (possibility to stay few weeks in the different labs), functioning and publishing costs.