Société Française de Bioinformatique

Mots-Clés

Bioinformatics Programming Pipelines Software Cloud Computing

Description

Bioinformatics Senior Engineer (M/F)

Micropep Technologies, Auzeville-Tolosane, France, Permanent contract (CDI)

(Homeworking EU/US accepted)

Micropep Technologies is a young innovative plant biotechnology startup based in Toulouse, France. The company, which raised 8.5M€ in the latest fundraising, is developing a new generation of innovative plant stimulation and plant protection solutions for a more sustainable agriculture. Our products are based on a disruptive technology that uses natural peptides (miPEPs) that can transiently regulate the expression of plants’ microRNAs and their targeted genes*.

The peptide design platform is currently looking for a bioinformatics senior engineer with strong programming skills and knowledge of biology to join the team and both develop and strengthen its bioinformatics pipelines.

ESSENTIAL DUTIES & RESPONSIBILITIES

• Developing and industrializing micropep’s bioinformatics pipelines
• Assisting in the set-up of new research proofs of concept
• Providing support around micropep’s bioinformatics-related pipelines and tools
• Implementing pipelines using cloud-computing services
• Developing our core bioinformatics software

QUALIFICATIONS & EXPERIENCE

• M.S. required (PhD preferred) in computational biology or mathematics or computer science
• 3+ years’ experience in biological software and algorithm development (contribution to recognized bioinformatics software is appreciated)
• Experience in implementing data processing pipelines in a cloud computing service is highly appreciated
• Experience with working with biological data including any omics data
• Experience in using publicly available bioinformatics software
• Prior use of high-performance computing environments is a plus

REQUIRED TECHNICAL SKILLS

• Programming: fluent OOP and scripting in python
• Excellent algorithm design skills and data structure knowledge
• Proficiency in using Linux operating system and the command-line
• Proficiency in using a version-management system like git
• Knowledge of AWS or another cloud-provider is highly appreciated
• Knowledge of standard bioinformatics tools, databases
• Familiarity with the biological data formats (Fasta, Fastq, GFF, …)

DESIRED COMPETENCIES

• Good organization skills and good optimization of the working environment
• Ability to manage multiple projects and overlapping deadlines
• Natural ability for problem-solving
• Good communication skills, both written and verbal (written English mandatory)
• Autonomy
• Rigor

CONDITIONS

• Compensation: based on experience
• End of application: September 2021
• Permanent contract (CDI)
• Location: Auzeville Tolosane, France or homeworking EU/US
• To know more about Micropep, check our website: micro-pep.com

Applications (CV, cover letters and optional references) must be sent to: careers@micro-pep.com with the reference 2021-08/DSN-BIF

* Lauressergues, D., Couzigou, J., Clemente, H. et al. Primary transcripts of microRNAs encode regulatory peptides. Nature 520, 90–93 (2015) doi:10.1038/nature14346