Société Française de Bioinformatique

Mots-Clés

Galaxy, Docker, Python, CLI

Description

We are looking for a highly motivated individual to join our dynamic research group at the MICALIS Institute (INRAE & University of Paris-Saclay), a world-class research hub with over 350 scientists working in the fields of systems and synthetic biology for health and biotechnology.

Context

You will be involved in the Paris Biofoundry (https://parisbiofoundry.org), first French academic biofoundry funded by the Ile-de-France Region (Paris area). The biofoundry is spread over 4 sites in Ile-de-France: DNA Foundry (Sorbonne Université, Paris), Mammalian cells Biofoundry (Curie Institute, Paris), Cell-Free Biofoundry (MICALIS Institute, Jouy-en-Josas), and Scale-Up Biofoundry (GENOPOLE, Évry). As a biofoundry has both computational and wet lab activities, each biofoundry has its own wet lab with hardware devices. The computational part will be managed by a Galaxy web portal. As part of our team, you will be in charge of deploying the Galaxy portal that will integrate software tools from each biofoundry.

Key Responsibilities

• Design and deploy the Galaxy portal,
• Integrate tools into Galaxy,
• Connect Galaxy to Momentum™ Workflow Scheduling Software,
• Train users.

Profile

• Engineer or Master 2 in Computer Science or IT.
• Programming (Python…) and IT skills (sys admin, docker, conda…).
• Excellent communication and teamwork abilities, thriving in an interdisciplinary environment.

Work environment

• Contract: 12-month renewable, aligned with French legislation.
• Salary: 2300 – 2600 € net / month.
• Location: Jouy-en-Josas.

Contact

Send CV + covering letter to Joan Hérisson (joan.herisson@univ-evry.fr).

Links

• MICALIS: https://www.micalis.fr/equipe/bio-retrosynth/
• Galaxy Workflow Manager: https://galaxyproject.org
• Galaxy-SynBioCAD: https://www.micalis.fr/equipe/galaxy-synbiocad/
• Cell-Free Biofoundry: https://www.micalis.fr/equipe/cell-free/